Xcode and GATB

To help new developers to start working with GATB-Core projects on OSX computers, we have setup this article to explain how to install and configure the Xcode IDE for that purpose. Among others, it shows how to use CMake (on which GATB projects rely) and Xcode in a very straightforward…

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pyGATB: Python wrapper for GATB

We have just released a Python 3 wrapper for the GATB-Core library: pyGATB. The current release of pyGATB gives access to the following GATB-Core components: Bank: the class that enables to load Fasta and Fastaq files Sequence: the class that holds a sequence (ID, letters, quality) Graph: the class that…

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GATB Tutorial in Montpellier – June 2017

A new GATB Programming Day is scheduled on June 16th, 2017 in Montpellier, France. This event takes place to provide bioinformatics developers with the basics of GATB-Core library to design and create high-performance softwares to decypher reads data. Please, follow this link to have all details concerning this event.

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Eclipse C/C++ IDE and GATB

To help new developers to start working with GATB-Core projects, we have setup this article to explain how to install and configure the Eclipse C/C++ IDE for that purpose. Among others, it shows how to use CMake (on which GATB projects rely) and Eclipse in a very straightforward way on…

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GATB used by NCBI for Gnomon

NCBI uses parts of the GATB-Core library in the Gnomon eukaryotic gene prediction tool. This can be reviewed in the De Bruijn graph implementation of Gnomon available in the NCBI c++ Toolkit, see here.

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GATB Programming Day – Spring 2017

Are you interested in learning how to make high-performance software tools to decypher reads data? Are you a little familiar with C++ programming? Are you happy to come to Spain during Spring 2017? Ok, this event if fully made for you: The Genscale team will hold a GATB Special Session during…

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New GATB programming tutorial

We have created a brand new tutorial to help you learning the GATB-Core API. It provides you with a 3-step learning trail: Rookie, Expert and Advanced. All tutorial trails contain a little piece of theory and a c++ code snippet… that can be executed online, without the need (for you)…

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GATB programming day – Fall 2016

Are you interested in learning how to create high-performance NGS data analysis tools? Are you familiar with C++ programming and can you speak English? If so, Ok, well done ;). This event is for you: The GATB programming day: learn the basics of high-performance NGS data processing using the GATB-Core library. This second edition…

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MindTheGap new release !

MindTheGap v2.0.0 has just been released ! In fact, this is the first release with the GATB library. After a long period with few developments (publication in 2014), the whole code of MindTheGap was refactored to use the GATB library. Therefore MindTheGap became faster and easier to use. In addition,…

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