Tutorial: GATB programming day – IBC-Montpellier

Date & Location

June 16th, 2017 – IBC, Montpellier, France.

Tutorial language: French.

Prepare your venue

  • Participants come with their own computer; Linux, Windows and MacOSX are all ok
  • Participants should have basic knowledge in c++ programming
  • Before coming to Montpellier, please install the Tutorial Material


This event is free but we request participant to register here
(this is important for us to setup the session appropriately, given the number of attendees).

Program of the day

9 amWelcome coffee
9:30 – 11:00:
– a theoretical introducton to GATB: the basic concepts
– GATB-Core practical coding session 1: I/O operations on reads files

11:00-11:20pm: Coffee break

11:20 – 12:30:
– the GATB de Bruijn graph API

12:30-2pm: Lunch on site

2:00-3:30 pm:
– GATB-Core practical coding session 2: k-mer and graph APIs in action
– GATB-Core practical coding session 3: writing a short read corrector tool

3:30-3:50pm: Coffee break

– pyGATB: the Python wrapper for GATB
– Q&A session: obtain answers from GATB experts

5:30pm: end of the day


Training site

Institut de Biologie Computationnelle
Université de Montpellier
860 rue St Priest
Bâtiment 5 – CC05019
34095 Montpellier Cedex 5 -France

GPS coordinates : 43°38’13.5″N, 3°50’30.6″E
Phone : +33/0 467 14 95 64


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