Software

Depending on your needs, you can choose one the following software components.

What would you like to do ? Download
Count k-mers in sequences DSK
Compress short read files Leon
Correct short reads Bloocoo
Correct errors on long reads LoRDEC
LoRMA
Construct compacted de Bruijn graphs (unitigs) BCALM
Assemble reads Minia
Extend a given sequence by targeted assembly Mapsembler2
Discover SNPs and indels from non-assembled reads without reference genome DiscoSNP++
Detect insertion variants MindTheGap
Discover inversion from non-assembled data TakeABreak
Compare large-scale metagenomics datasets Simka
Detect similar reads from potentially large read set rconnector
Identify k-mers specific to a given set of genomes skif2
Run GATB-Tools using Docker Docker container
de-novo assembly pipeline (error correction / contigs / scaffolding) for genomes and meta-genomes de-novo pipeline
Develop new software relying on GATB core algorithms GATB-CORE library

 

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