Depending on your needs, you can choose one the following software components.
| What would you like to do ? | Download |
| Count k-mers in sequences | DSK |
| Compress short read files | Leon |
| Correct short reads | Bloocoo |
| Correct errors on long reads | LoRDEC LoRMA |
| Construct compacted de Bruijn graphs (unitigs) | BCALM |
| Assemble reads | Minia |
| Extend a given sequence by targeted assembly | Mapsembler2 |
| Discover SNPs and indels from non-assembled reads without reference genome | DiscoSNP++ |
| Detect insertion variants | MindTheGap |
| Discover inversion from non-assembled data | TakeABreak |
| Compare large-scale metagenomics datasets | Simka |
| Detect similar reads from potentially large read set | rconnector |
| Identify k-mers specific to a given set of genomes | skif2 |
| Run GATB-Tools using Docker | Docker container |
| de-novo assembly pipeline (error correction / contigs / scaffolding) for genomes and meta-genomes | de-novo pipeline |
| Develop new software relying on GATB core algorithms | GATB-CORE library |
