Are you interested in learning how to make high-performance software tools to decypher reads data? Are you a little familiar with C++ programming? Are you happy to come to Spain during Spring 2017? Ok, this event if fully made for you: The Genscale team will hold a GATB Special Session during…
We have created a brand new tutorial to help you learning the GATB-Core API. It provides you with a 3-step learning trail: Rookie, Expert and Advanced. All tutorial trails contain a little piece of theory and a c++ code snippet… that can be executed online, without the need (for you)…
Are you interested in learning how to create high-performance NGS data analysis tools? Are you familiar with C++ programming and can you speak English? If so, Ok, well done ;). This event is for you: The GATB programming day: learn the basics of high-performance NGS data processing using the GATB-Core library. This second edition…
MindTheGap v2.0.0 has just been released ! In fact, this is the first release with the GATB library. After a long period with few developments (publication in 2014), the whole code of MindTheGap was refactored to use the GATB library. Therefore MindTheGap became faster and easier to use. In addition,…
On June 15th, 2016, our training room at Inria Rennes welcomed 15 people (researchers, engineers and PhD students in bioinformatics) to attend to our first GATB programming day. Quite a success since our room was fully occupied! During that day, we got into the following topics: a theoretical introducton to…
Get it on Github Release notes Assembly-inspired de Bruijn graph simplifications // removes tips, bubbles and erroneous connections, // similar to some of the algorithms implemented in the SPAdes assembler graph.simplify(); Faster graph traversal can be activated using a single command. // allocates 1 byte/node to precompute adjacency for each…
A new discoSnp++ available. It fixes a kissread bug, that affected slightly coverage counting. Check out the dedicated web page: https://github.com/GATB/DiscoSnp
*Event is now fully booked! Please get in touch with us to pre-book for a future session.* The first GATB programming day will be held at Inria Rennes on coming June 15th. You are interested in learning how to create high-performance NGS data analysis tool? You have good skills in…
A Github repository has been setup to provide a convenient access to GATB-Core softwares. It can be used to get instant access to latest sources as well as official releases. See https://github.com/GATB/gatb-core.
Our new read compression software Leon has been published in BMC Bioinformatics : http://www.biomedcentral.com/1471-2105/16/288. Leon is a software to compress Next Generation Sequencing data. It can compress Fasta or Fastq format. The method does not require any reference genome, instead a reference is built de novo from the set of…
