GATB Programming Day – Rennes – October 24th, 2017

GATB-Core is a modern c++/11 library that natively provides high-performance and memory-efficient operations to handle Fasta/Fastq files, k-mers, bloom filters and de Bruijn graphs.

Learning GATB-Core API (Application Programming Interface) is the purpose of this programming day: to provide you with theoretical concepts and corresponding code snippets to design and write GATB tools.

Date & Location: October 24th, 2017 – IRISA, Rennes, France

Language: French

Registration: This event is free but we request participants to register by sending an email to

Program of the day

9 am – Welcome coffee
9:30 – 11:00 am
– A theoretical introduction to GATB: the basic concepts
– GATB-Core practical coding session 1: I/O operations on reads files

11:00 – Coffee break

11:20 – 12:30 am
– The GATB de Bruijn graph API

12:30 – Lunch on site

2:00-3:30 pm
– GATB-Core practical coding session 2: k-mer and graph APIs in action
– GATB-Core practical coding session 3: writing a short read corrector tool

3:30 – Coffee break

– pyGATB: the Python wrapper for GATB
– Q&A session: obtain answers from GATB experts

5:30 – end of the day


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