GATB Programming Day – Spring 2017

Are you interested in learning how to make high-performance software tools to decypher reads data? Are you a little familiar with C++ programming? Are you happy to come to Spain during Spring 2017? Ok, this event if fully made for you: The Genscale team will hold a GATB Special Session during…

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New GATB programming tutorial

We have created a brand new tutorial to help you learning the GATB-Core API. It provides you with a 3-step learning trail: Rookie, Expert and Advanced. All tutorial trails contain a little piece of theory and a c++ code snippet… that can be executed online, without the need (for you)…

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GATB programming day – Fall 2016

Are you interested in learning how to create high-performance NGS data analysis tools? Are you familiar with C++ programming and can you speak English? If so, Ok, well done ;). This event is for you: The GATB programming day: learn the basics of high-performance NGS data processing using the GATB-Core library. This second edition…

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MindTheGap new release !

MindTheGap v2.0.0 has just been released ! In fact, this is the first release with the GATB library. After a long period with few developments (publication in 2014), the whole code of MindTheGap was refactored to use the GATB library. Therefore MindTheGap became faster and easier to use. In addition,…

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GATB programming day: summary

On June 15th, 2016, our training room at Inria Rennes welcomed 15 people (researchers, engineers and PhD students in bioinformatics) to attend to our first GATB programming day. Quite a success since our room was fully occupied! During that day, we got into the following topics: a theoretical introducton to…

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GATB-core 1.2.0 released

Get it on Github Release notes Assembly-inspired de Bruijn graph simplifications // removes tips, bubbles and erroneous connections, // similar to some of the algorithms implemented in the SPAdes assembler graph.simplify(); Faster graph traversal can be activated using a single command. // allocates 1 byte/node to precompute adjacency for each…

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GATB programming day – Summer 2016

*Event is now fully booked! Please get in touch with us to pre-book for a future session.* The first GATB programming day will be held at Inria Rennes on coming June 15th. You are interested in learning how to create high-performance NGS data analysis tool? You have good skills in…

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