GATB-Core is a modern c++/11 library that natively provides high-performance and memory-efficient operations to handle Fasta/Fastq files, k-mers, bloom filters and de Bruijn graphs.
Learning GATB-Core API (Application Programming Interface) is the purpose of this programming day: to provide you with theoretical concepts and corresponding code snippets to design and write GATB tools.
Date & Location: October 24th, 2017 – IRISA, Rennes, France
Language: French
Registration: This event is free but we request participants to register by sending an email to lavenier@irisa.fr
Program of the day
9 am – Welcome coffee
9:30 – 11:00 am
– A theoretical introduction to GATB: the basic concepts
– GATB-Core practical coding session 1: I/O operations on reads files
11:00 – Coffee break
11:20 – 12:30 am
– The GATB de Bruijn graph API
12:30 – Lunch on site
2:00-3:30 pm
– GATB-Core practical coding session 2: k-mer and graph APIs in action
– GATB-Core practical coding session 3: writing a short read corrector tool
3:30 – Coffee break
3:50-5:30pm
– pyGATB: the Python wrapper for GATB
– Q&A session: obtain answers from GATB experts
5:30 – end of the day
Organizers
- Genscale Team, Inria Rennes
