A new GATB Programming Day is scheduled on June 16th, 2017 in Montpellier, France. This event takes place to provide bioinformatics developers with the basics of GATB-Core library to design and create high-performance softwares to decypher reads data. Please, follow this link to have all details concerning this event.
A update of GATB-CORE is available. Check out here the novelties of this 1.3.0 release of the GATB Core Library.
To help new developers to start working with GATB-Core projects, we have setup this article to explain how to install and configure the Eclipse C/C++ IDE for that purpose. Among others, it shows how to use CMake (on which GATB projects rely) and Eclipse in a very straightforward way on…
NCBI uses parts of the GATB-Core library in the Gnomon eukaryotic gene prediction tool. This can be reviewed in the De Bruijn graph implementation of Gnomon available in the NCBI c++ Toolkit, see here.
The Kover software (k-mer based genomic biomarker discovery) now uses GATB for multi-sample k-mer counting. See a recent article on antimicrobial resistance from A. Drouin et al, https://arxiv.org/pdf/1612.01030v1.pdf.
Are you interested in learning how to make high-performance software tools to decypher reads data? Are you a little familiar with C++ programming? Are you happy to come to Spain during Spring 2017? Ok, this event if fully made for you: The Genscale team will hold a GATB Special Session during…
We have created a brand new tutorial to help you learning the GATB-Core API. It provides you with a 3-step learning trail: Rookie, Expert and Advanced. All tutorial trails contain a little piece of theory and a c++ code snippet… that can be executed online, without the need (for you)…
Are you interested in learning how to create high-performance NGS data analysis tools? Are you familiar with C++ programming and can you speak English? If so, Ok, well done ;). This event is for you: The GATB programming day: learn the basics of high-performance NGS data processing using the GATB-Core library. This second edition…
MindTheGap v2.0.0 has just been released ! In fact, this is the first release with the GATB library. After a long period with few developments (publication in 2014), the whole code of MindTheGap was refactored to use the GATB library. Therefore MindTheGap became faster and easier to use. In addition,…
BCALM 2 is a bioinformatics software for constructing the compacted de Bruijn graph of sequencing data. Publication: Compacting de Bruijn graphs from sequencing data quickly and in low memory Software: BCALM 2
