pyGATB: Python wrapper for GATB

We have just released a Python 3 wrapper for the GATB-Core library: pyGATB.

The current release of pyGATB gives access to the following GATB-Core components:

  • Bank: the class that enables to load Fasta and Fastaq files
  • Sequence: the class that holds a sequence (ID, letters, quality)
  • Graph: the class that holds the De Bruijn graph
  • Node: the class that makes graph’s nodes

Using that API you can start prototyping algorithms:

all of that directly using the Python 3 Programming Language.

pyGATB is an open-source project hosted on Github.
View pyGATB in action.
Read the documentation.

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